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PyDISH No: 03485

PDB: 2e80,
chainID: A, resSeq: 1510
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.6 Å

axial ligand #1: HIS

chainID: A,
resSeq: 102,
Coordination distance[Å]: 2.081
molecule: Cytochrome c-552
EC number: 1.7.2.2
Organism: Wolinella succinogenes

axial ligand #2: HIS

chainID: A,
resSeq: 215,
Coordination distance[Å]: 2.034
molecule: same as ligand #1

List of other hemes in pdb:2e80

ID of heme Distortion Axial ligands on heme Function & structure
2e80-A-1508
sad. +0.50
ruf. -0.70
dom. +0.07
bre. -0.00
LYS chainID: A,
resSeq: 134,
molecule: Cytochrome c-552
oxidoreductase
oligomeric count: 2
pocket vol.: 417.0 Å3
d(Fe-oop): 0.006 Å
NO2 chainID: A, resSeq: 704,
molecule: NITRITE ION
2e80-A-1509
sad. +0.65
ruf. -0.77
dom. -0.09
bre. +0.00
HIS chainID: A,
resSeq: 172,
molecule: Cytochrome c-552
oxidoreductase
oligomeric count: 2
pocket vol.: 414.0 Å3
d(Fe-oop): 0.026 Å
HIS chainID: A, resSeq: 313,
molecule: Cytochrome c-552
2e80-A-1511
sad. +0.10
ruf. -1.07
dom. +0.18
bre. +0.10
HIS chainID: A,
resSeq: 299,
molecule: Cytochrome c-552
oxidoreductase
oligomeric count: 2
pocket vol.: 462.0 Å3
d(Fe-oop): 0.013 Å
HIS chainID: A, resSeq: 405,
molecule: Cytochrome c-552
2e80-A-1512
sad. +0.17
ruf. -0.77
dom. +0.03
bre. -0.02
HIS chainID: A,
resSeq: 288,
molecule: Cytochrome c-552
oxidoreductase
oligomeric count: 2
pocket vol.: 508.0 Å3
d(Fe-oop): 0.003 Å
HIS chainID: A, resSeq: 330,
molecule: Cytochrome c-552