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PyDISH No: 03478

PDB: 2e76,
chainID: A, resSeq: 301
heme type: B

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 3.41 Å

axial ligand #1: HIS

chainID: A,
resSeq: 86,
Coordination distance[Å]: 1.73
molecule: Cytochrome b6
Organism: Mastigocladus laminosus

axial ligand #2: HIS

chainID: A,
resSeq: 187,
Coordination distance[Å]: 1.903
molecule: same as ligand #1

List of other hemes in pdb:2e76

ID of heme Distortion Axial ligands on heme Function & structure
2e76-A-302
sad. -0.91
ruf. -0.49
dom. +0.20
bre. +0.39
HIS chainID: A,
resSeq: 100,
molecule: Cytochrome b6
electron transporter
oligomeric count: 16
pocket vol.: 364.0 Å3
d(Fe-oop): 0.015 Å
HIS chainID: A, resSeq: 202,
molecule: Cytochrome b6
2e76-A-303
sad. +0.28
ruf. -0.32
dom. +0.01
bre. +0.10
TDS chainID: B,
resSeq: 1202,
molecule: 8-HYDROXY-5,7-DIMETHOXY-3-METHYL-2-TRIDECYL-4H-CHROMEN-4-ONE
electron transporter
oligomeric count: 16
pocket vol.: 557.0 Å3
d(Fe-oop): 0.553 Å
HOH chainID: A, resSeq: 1106,
molecule: water
2e76-C-301
sad. -0.87
ruf. -0.40
dom. -0.30
bre. +0.06
TYR chainID: C,
resSeq: 1,
molecule: Apocytochrome f
electron transporter
oligomeric count: 16
pocket vol.: 316.0 Å3
d(Fe-oop): 0.023 Å
HIS chainID: C, resSeq: 26,
molecule: Apocytochrome f