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PyDISH No: 03458

PDB: 2dyr,
chainID: A, resSeq: 515
heme type: A

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.8 Å

axial ligand #1: HIS

chainID: A,
resSeq: 61,
Coordination distance[Å]: 1.958
molecule: Cytochrome c oxidase subunit 1
EC number: 1.9.3.1
Organism: Bos taurus

axial ligand #2: HIS

chainID: A,
resSeq: 378,
Coordination distance[Å]: 1.884
molecule: same as ligand #1

List of other hemes in pdb:2dyr

ID of heme Distortion Axial ligands on heme Function & structure
2dyr-A-516
sad. -0.41
ruf. -0.00
dom. +0.44
bre. -0.06
HIS chainID: A,
resSeq: 376,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 26
pocket vol.: 693.0 Å3
d(Fe-oop): 0.208 Å
Not assigned.
2dyr-N-515
sad. -0.54
ruf. -0.00
dom. +0.16
bre. -0.16
HIS chainID: N,
resSeq: 61,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 26
pocket vol.: 584.0 Å3
d(Fe-oop): 0.021 Å
HIS chainID: N, resSeq: 378,
molecule: Cytochrome c oxidase subunit 1
2dyr-N-516
sad. -0.35
ruf. +0.03
dom. +0.46
bre. -0.08
HIS chainID: N,
resSeq: 376,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 26
pocket vol.: 717.0 Å3
d(Fe-oop): 0.229 Å
Not assigned.