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PyDISH No: 03390

PDB: 2cym,
chainID: A, resSeq: 109
heme type: B

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 2.0 Å

axial ligand #1: HIS

chainID: A,
resSeq: 35,
Coordination distance[Å]: 2.084
molecule: CYTOCHROME C3
Organism: Desulfovibrio vulgaris

axial ligand #2: HIS

chainID: A,
resSeq: 52,
Coordination distance[Å]: 2.042
molecule: same as ligand #1

List of other hemes in pdb:2cym

ID of heme Distortion Axial ligands on heme Function & structure
2cym-A-108
sad. +1.01
ruf. +0.35
dom. +0.28
bre. -0.03
HIS chainID: A,
resSeq: 70,
molecule: CYTOCHROME C3
electron transporter
oligomeric count: 1
pocket vol.: 448.0 Å3
d(Fe-oop): 0.035 Å
HIS chainID: A, resSeq: 106,
molecule: CYTOCHROME C3
2cym-A-110
sad. +0.06
ruf. -0.66
dom. -0.28
bre. -0.06
HIS chainID: A,
resSeq: 22,
molecule: CYTOCHROME C3
electron transporter
oligomeric count: 1
pocket vol.: 509.0 Å3
d(Fe-oop): 0.109 Å
HIS chainID: A, resSeq: 34,
molecule: CYTOCHROME C3
2cym-A-111
sad. +0.32
ruf. -0.27
dom. +0.05
bre. -0.07
HIS chainID: A,
resSeq: 25,
molecule: CYTOCHROME C3
electron transporter
oligomeric count: 1
pocket vol.: 510.0 Å3
d(Fe-oop): 0.062 Å
HIS chainID: A, resSeq: 83,
molecule: CYTOCHROME C3