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PyDISH No: 03367

PDB: 2cvc,
chainID: A, resSeq: 1001
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 2.0 Å
origomeric count: 1

axial ligand #1: HIS

chainID: A,
resSeq: 66,
Coordination distance[Å]: 2.035
molecule: High-molecular-weight cytochrome c precursor
Organism: Desulfovibrio vulgaris

axial ligand #2: HIS

chainID: A,
resSeq: 84,
Coordination distance[Å]: 1.982
molecule: same as ligand #1

List of other hemes in pdb:2cvc

ID of heme	Distortion	Axial ligands on heme		Function & structure
2cvc-A-1002	`sad. +0.37 ruf. -0.24 dom. +0.01 bre. -0.24`	HIS	chainID: A, resSeq: 69, molecule: High-molecular-weight cytochrome c precursor	electron transporter oligomeric count: 1 pocket vol.: 454.0 Å³ d(Fe-oop): 0.034 Å
2cvc-A-1002	`sad. +0.37 ruf. -0.24 dom. +0.01 bre. -0.24`	HIS	chainID: A, resSeq: 118, molecule: High-molecular-weight cytochrome c precursor
2cvc-A-1003	`sad. -0.05 ruf. -0.43 dom. -0.09 bre. -0.27`	HIS	chainID: A, resSeq: 111, molecule: High-molecular-weight cytochrome c precursor	electron transporter oligomeric count: 1 pocket vol.: 384.0 Å³ d(Fe-oop): 0.021 Å
2cvc-A-1003	`sad. -0.05 ruf. -0.43 dom. -0.09 bre. -0.27`	HIS	chainID: A, resSeq: 139, molecule: High-molecular-weight cytochrome c precursor
2cvc-A-1004	`sad. -0.18 ruf. -0.49 dom. +0.09 bre. -0.23`	HIS	chainID: A, resSeq: 159, molecule: High-molecular-weight cytochrome c precursor	electron transporter oligomeric count: 1 pocket vol.: 369.0 Å³ d(Fe-oop): 0.030 Å
2cvc-A-1004	`sad. -0.18 ruf. -0.49 dom. +0.09 bre. -0.23`	HIS	chainID: A, resSeq: 182, molecule: High-molecular-weight cytochrome c precursor
2cvc-A-1005	`sad. -0.04 ruf. -0.14 dom. -0.05 bre. -0.27`	HIS	chainID: A, resSeq: 183, molecule: High-molecular-weight cytochrome c precursor	electron transporter oligomeric count: 1 pocket vol.: 512.0 Å³ d(Fe-oop): 0.027 Å
2cvc-A-1005	`sad. -0.04 ruf. -0.14 dom. -0.05 bre. -0.27`	HIS	chainID: A, resSeq: 206, molecule: High-molecular-weight cytochrome c precursor
2cvc-A-1006	`sad. +0.24 ruf. -0.45 dom. +0.10 bre. -0.23`	HIS	chainID: A, resSeq: 162, molecule: High-molecular-weight cytochrome c precursor	electron transporter oligomeric count: 1 pocket vol.: 436.0 Å³ d(Fe-oop): 0.054 Å
2cvc-A-1006	`sad. +0.24 ruf. -0.45 dom. +0.10 bre. -0.23`	HIS	chainID: A, resSeq: 229, molecule: High-molecular-weight cytochrome c precursor
2cvc-A-1007	`sad. +0.58 ruf. -0.81 dom. -0.01 bre. -0.17`	HIS	chainID: A, resSeq: 222, molecule: High-molecular-weight cytochrome c precursor	electron transporter oligomeric count: 1 pocket vol.: 487.0 Å³ d(Fe-oop): 0.056 Å
2cvc-A-1007	`sad. +0.58 ruf. -0.81 dom. -0.01 bre. -0.17`	HIS	chainID: A, resSeq: 248, molecule: High-molecular-weight cytochrome c precursor
2cvc-A-1008	`sad. -0.13 ruf. -0.57 dom. +0.04 bre. -0.21`	HIS	chainID: A, resSeq: 298, molecule: High-molecular-weight cytochrome c precursor	electron transporter oligomeric count: 1 pocket vol.: 452.0 Å³ d(Fe-oop): 0.030 Å
2cvc-A-1008	`sad. -0.13 ruf. -0.57 dom. +0.04 bre. -0.21`	HIS	chainID: A, resSeq: 312, molecule: High-molecular-weight cytochrome c precursor
2cvc-A-1009	`sad. +0.42 ruf. -0.15 dom. -0.09 bre. -0.28`	HIS	chainID: A, resSeq: 313, molecule: High-molecular-weight cytochrome c precursor	electron transporter oligomeric count: 1 pocket vol.: 431.0 Å³ d(Fe-oop): 0.036 Å
2cvc-A-1009	`sad. +0.42 ruf. -0.15 dom. -0.09 bre. -0.28`	HIS	chainID: A, resSeq: 323, molecule: High-molecular-weight cytochrome c precursor
2cvc-A-1010	`sad. +0.40 ruf. -0.43 dom. +0.34 bre. -0.20`	HIS	chainID: A, resSeq: 301, molecule: High-molecular-weight cytochrome c precursor	electron transporter oligomeric count: 1 pocket vol.: 449.0 Å³ d(Fe-oop): 0.032 Å
2cvc-A-1010	`sad. +0.40 ruf. -0.43 dom. +0.34 bre. -0.20`	HIS	chainID: A, resSeq: 353, molecule: High-molecular-weight cytochrome c precursor
2cvc-A-1011	`sad. -0.03 ruf. -0.07 dom. -0.21 bre. -0.21`	HIS	chainID: A, resSeq: 366, molecule: High-molecular-weight cytochrome c precursor	electron transporter oligomeric count: 1 pocket vol.: 405.0 Å³ d(Fe-oop): 0.020 Å
2cvc-A-1011	`sad. -0.03 ruf. -0.07 dom. -0.21 bre. -0.21`	HIS	chainID: A, resSeq: 470, molecule: High-molecular-weight cytochrome c precursor
2cvc-A-1012	`sad. -0.42 ruf. +0.04 dom. +0.01 bre. -0.22`	HIS	chainID: A, resSeq: 341, molecule: High-molecular-weight cytochrome c precursor	electron transporter oligomeric count: 1 pocket vol.: 395.0 Å³ d(Fe-oop): 0.034 Å
2cvc-A-1012	`sad. -0.42 ruf. +0.04 dom. +0.01 bre. -0.22`	HIS	chainID: A, resSeq: 382, molecule: High-molecular-weight cytochrome c precursor
2cvc-A-1013	`sad. -0.34 ruf. -0.20 dom. -0.28 bre. -0.20`	HIS	chainID: A, resSeq: 449, molecule: High-molecular-weight cytochrome c precursor	electron transporter oligomeric count: 1 pocket vol.: 444.0 Å³ d(Fe-oop): 0.082 Å
2cvc-A-1013	`sad. -0.34 ruf. -0.20 dom. -0.28 bre. -0.20`	HIS	chainID: A, resSeq: 481, molecule: High-molecular-weight cytochrome c precursor
2cvc-A-1014	`sad. -0.19 ruf. -0.32 dom. -0.10 bre. -0.25`	HIS	chainID: A, resSeq: 482, molecule: High-molecular-weight cytochrome c precursor	electron transporter oligomeric count: 1 pocket vol.: 482.0 Å³ d(Fe-oop): 0.022 Å
2cvc-A-1014	`sad. -0.19 ruf. -0.32 dom. -0.10 bre. -0.25`	HIS	chainID: A, resSeq: 497, molecule: High-molecular-weight cytochrome c precursor
2cvc-A-1015	`sad. +0.45 ruf. -0.09 dom. +0.24 bre. -0.17`	HIS	chainID: A, resSeq: 523, molecule: High-molecular-weight cytochrome c precursor	electron transporter oligomeric count: 1 pocket vol.: 477.0 Å³ d(Fe-oop): 0.347 Å
2cvc-A-1015	`sad. +0.45 ruf. -0.09 dom. +0.24 bre. -0.17`	Not assigned.
2cvc-A-1016	`sad. -0.12 ruf. -0.11 dom. -0.24 bre. -0.20`	HIS	chainID: A, resSeq: 516, molecule: High-molecular-weight cytochrome c precursor	electron transporter oligomeric count: 1 pocket vol.: 416.0 Å³ d(Fe-oop): 0.007 Å
2cvc-A-1016	`sad. -0.12 ruf. -0.11 dom. -0.24 bre. -0.20`	HIS	chainID: A, resSeq: 540, molecule: High-molecular-weight cytochrome c precursor