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PyDISH No: 03338

PDB: 2cdv,
chainID: A, resSeq: 111
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 1.8 Å

axial ligand #1: HIS

chainID: A,
resSeq: 25,
Coordination distance[Å]: 2.121
molecule: CYTOCHROME C3
Organism: Desulfovibrio vulgaris

axial ligand #2: HIS

chainID: A,
resSeq: 83,
Coordination distance[Å]: 1.949
molecule: same as ligand #1

List of other hemes in pdb:2cdv

ID of heme Distortion Axial ligands on heme Function & structure
2cdv-A-108
sad. +1.02
ruf. +0.43
dom. +0.06
bre. -0.05
HIS chainID: A,
resSeq: 70,
molecule: CYTOCHROME C3
electron transporter
oligomeric count: 1
pocket vol.: 388.0 Å3
d(Fe-oop): 0.003 Å
HIS chainID: A, resSeq: 106,
molecule: CYTOCHROME C3
2cdv-A-109
sad. +0.15
ruf. -0.88
dom. -0.09
bre. -0.02
HIS chainID: A,
resSeq: 35,
molecule: CYTOCHROME C3
electron transporter
oligomeric count: 1
pocket vol.: 498.0 Å3
d(Fe-oop): 0.053 Å
HIS chainID: A, resSeq: 52,
molecule: CYTOCHROME C3
2cdv-A-110
sad. +0.17
ruf. -0.84
dom. -0.16
bre. -0.02
HIS chainID: A,
resSeq: 22,
molecule: CYTOCHROME C3
electron transporter
oligomeric count: 1
pocket vol.: 433.0 Å3
d(Fe-oop): 0.054 Å
HIS chainID: A, resSeq: 34,
molecule: CYTOCHROME C3