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PyDISH No: 03119

PDB: 1zrt,
chainID: D, resSeq: 501
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 3.51 Å

axial ligand #1: HIS

chainID: D,
resSeq: 38,
Coordination distance[Å]: 1.992
molecule: Cytochrome c1
Organism: Rhodobacter capsulatus

axial ligand #2: MET

chainID: D,
resSeq: 183,
Coordination distance[Å]: 2.344
molecule: same as ligand #1

List of other hemes in pdb:1zrt

ID of heme Distortion Axial ligands on heme Function & structure
1zrt-C-501
sad. +0.25
ruf. -0.60
dom. -0.21
bre. -0.21
HIS chainID: C,
resSeq: 97,
molecule: Cytochrome b
electron transporter
oligomeric count: 6
pocket vol.: 393.0 Å3
d(Fe-oop): 0.110 Å
HIS chainID: C, resSeq: 198,
molecule: Cytochrome b
1zrt-C-502
sad. -0.38
ruf. -0.93
dom. -0.05
bre. -0.03
HIS chainID: C,
resSeq: 111,
molecule: Cytochrome b
electron transporter
oligomeric count: 6
pocket vol.: 391.0 Å3
d(Fe-oop): 0.035 Å
HIS chainID: C, resSeq: 212,
molecule: Cytochrome b
1zrt-P-501
sad. +0.24
ruf. -0.59
dom. -0.21
bre. -0.22
HIS chainID: P,
resSeq: 97,
molecule: Cytochrome b
electron transporter
oligomeric count: 6
pocket vol.: 395.0 Å3
d(Fe-oop): 0.025 Å
HIS chainID: P, resSeq: 198,
molecule: Cytochrome b
1zrt-P-502
sad. -0.40
ruf. -0.98
dom. +0.02
bre. +0.00
HIS chainID: P,
resSeq: 111,
molecule: Cytochrome b
electron transporter
oligomeric count: 6
pocket vol.: 380.0 Å3
d(Fe-oop): 0.145 Å
HIS chainID: P, resSeq: 212,
molecule: Cytochrome b
1zrt-Q-501
sad. -0.14
ruf. -0.54
dom. +0.12
bre. -0.16
HIS chainID: Q,
resSeq: 38,
molecule: Cytochrome c1
electron transporter
oligomeric count: 6
pocket vol.: 424.0 Å3
d(Fe-oop): 0.096 Å
MET chainID: Q, resSeq: 183,
molecule: Cytochrome c1