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PyDISH No: 03050

PDB: 1ynr,
chainID: D, resSeq: 81
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 2.0 Å

axial ligand #1: HIS

chainID: D,
resSeq: 14,
Coordination distance[Å]: 2.048
molecule: Cytochrome c-552
Organism: Hydrogenobacter thermophilus

axial ligand #2: MET

chainID: D,
resSeq: 59,
Coordination distance[Å]: 2.332
molecule: same as ligand #1

List of other hemes in pdb:1ynr

ID of heme Distortion Axial ligands on heme Function & structure
1ynr-A-81
 sad. +0.08
ruf. -0.62
dom. +0.06
bre. -0.12
 HIS chainID: A,
resSeq: 14,
molecule: Cytochrome c-552		 electron transporter
oligomeric count: 4
pocket vol.: 346.0 Å3
d(Fe-oop): 0.056 Å
MET chainID: A, resSeq: 59,
molecule: Cytochrome c-552
1ynr-B-81
 sad. +0.03
ruf. -0.61
dom. +0.06
bre. -0.22
 HIS chainID: B,
resSeq: 14,
molecule: Cytochrome c-552		 electron transporter
oligomeric count: 4
pocket vol.: 343.0 Å3
d(Fe-oop): 0.080 Å
MET chainID: B, resSeq: 59,
molecule: Cytochrome c-552
1ynr-C-81
 sad. +0.08
ruf. -0.56
dom. +0.07
bre. -0.28
 HIS chainID: C,
resSeq: 14,
molecule: Cytochrome c-552		 electron transporter
oligomeric count: 4
pocket vol.: 359.0 Å3
d(Fe-oop): 0.055 Å
MET chainID: C, resSeq: 59,
molecule: Cytochrome c-552