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Protein data
function: oxygen carrierexperiment: X-RAY DIFFRACTION
resolution: 3.15 Å
origomeric count: 24
axial ligand #1: HIS
chainID: U,resSeq: 96,
Coordination distance[Å]: 1.986
molecule: hemoglobin A1 chain
Organism: Riftia pachyptila
axial ligand #2: OXY
chainID: U,resSeq: 161,
Coordination distance[Å]: 1.964
molecule: OXYGEN MOLECULE
List of other hemes in pdb:1yhu
| ID of heme | Distortion | Axial ligands on heme | Function & structure | |
|---|---|---|---|---|
1yhu-A-160 |
sad. +0.26 ruf. +0.26 dom. -0.27 bre. -0.07 |
HIS | chainID: A, resSeq: 96, molecule: hemoglobin A1 chain |
oxygen carrier oligomeric count: 24 pocket vol.: 558.0 Å3 d(Fe-oop): 0.124 Å |
| OXY | chainID: A, resSeq: 161, molecule: OXYGEN MOLECULE |
|||
1yhu-B-160 |
sad. +0.06 ruf. +0.02 dom. -0.27 bre. +0.03 |
HIS | chainID: B, resSeq: 96, molecule: Giant hemoglobins B chain |
oxygen carrier oligomeric count: 24 pocket vol.: 557.0 Å3 d(Fe-oop): 0.183 Å |
| OXY | chainID: B, resSeq: 161, molecule: OXYGEN MOLECULE |
|||
1yhu-C-160 |
sad. -0.03 ruf. +0.12 dom. -0.34 bre. -0.07 |
HIS | chainID: C, resSeq: 99, molecule: hemoglobin B1a chain |
oxygen carrier oligomeric count: 24 pocket vol.: 570.0 Å3 d(Fe-oop): 0.158 Å |
| OXY | chainID: C, resSeq: 161, molecule: OXYGEN MOLECULE |
|||
1yhu-D-160 |
sad. -0.26 ruf. +0.00 dom. +0.35 bre. +0.00 |
HIS | chainID: D, resSeq: 98, molecule: hemoglobin B2 chain |
oxygen carrier oligomeric count: 24 pocket vol.: 553.0 Å3 d(Fe-oop): 0.169 Å |
| OXY | chainID: D, resSeq: 161, molecule: OXYGEN MOLECULE |
|||
1yhu-E-160 |
sad. +0.19 ruf. +0.29 dom. -0.29 bre. -0.03 |
HIS | chainID: E, resSeq: 96, molecule: hemoglobin A1 chain |
oxygen carrier oligomeric count: 24 pocket vol.: 523.0 Å3 d(Fe-oop): 0.144 Å |
| OXY | chainID: E, resSeq: 161, molecule: OXYGEN MOLECULE |
|||
1yhu-F-160 |
sad. +0.06 ruf. +0.05 dom. -0.29 bre. +0.04 |
HIS | chainID: F, resSeq: 96, molecule: Giant hemoglobins B chain |
oxygen carrier oligomeric count: 24 pocket vol.: 557.0 Å3 d(Fe-oop): 0.211 Å |
| OXY | chainID: F, resSeq: 161, molecule: OXYGEN MOLECULE |
|||
1yhu-G-160 |
sad. +0.03 ruf. +0.15 dom. -0.29 bre. -0.01 |
HIS | chainID: G, resSeq: 99, molecule: hemoglobin B1a chain |
oxygen carrier oligomeric count: 24 pocket vol.: 542.0 Å3 d(Fe-oop): 0.134 Å |
| OXY | chainID: G, resSeq: 161, molecule: OXYGEN MOLECULE |
|||
1yhu-H-160 |
sad. -0.23 ruf. +0.02 dom. +0.37 bre. +0.01 |
HIS | chainID: H, resSeq: 98, molecule: hemoglobin B2 chain |
oxygen carrier oligomeric count: 24 pocket vol.: 568.0 Å3 d(Fe-oop): 0.184 Å |
| OXY | chainID: H, resSeq: 161, molecule: OXYGEN MOLECULE |
|||
1yhu-I-160 |
sad. +0.26 ruf. +0.24 dom. -0.30 bre. -0.01 |
HIS | chainID: I, resSeq: 96, molecule: hemoglobin A1 chain |
oxygen carrier oligomeric count: 24 pocket vol.: 564.0 Å3 d(Fe-oop): 0.125 Å |
| OXY | chainID: I, resSeq: 161, molecule: OXYGEN MOLECULE |
|||
1yhu-J-160 |
sad. +0.07 ruf. +0.06 dom. -0.25 bre. +0.03 |
HIS | chainID: J, resSeq: 96, molecule: Giant hemoglobins B chain |
oxygen carrier oligomeric count: 24 pocket vol.: 556.0 Å3 d(Fe-oop): 0.172 Å |
| OXY | chainID: J, resSeq: 161, molecule: OXYGEN MOLECULE |
|||
1yhu-K-160 |
sad. +0.02 ruf. +0.13 dom. -0.23 bre. +0.02 |
HIS | chainID: K, resSeq: 99, molecule: hemoglobin B1a chain |
oxygen carrier oligomeric count: 24 pocket vol.: 544.0 Å3 d(Fe-oop): 0.107 Å |
| OXY | chainID: K, resSeq: 161, molecule: OXYGEN MOLECULE |
|||
1yhu-L-160 |
sad. -0.25 ruf. +0.02 dom. +0.34 bre. +0.04 |
HIS | chainID: L, resSeq: 98, molecule: hemoglobin B2 chain |
oxygen carrier oligomeric count: 24 pocket vol.: 559.0 Å3 d(Fe-oop): 0.176 Å |
| OXY | chainID: L, resSeq: 161, molecule: OXYGEN MOLECULE |
|||
1yhu-M-160 |
sad. +0.24 ruf. +0.24 dom. -0.31 bre. -0.03 |
HIS | chainID: M, resSeq: 96, molecule: hemoglobin A1 chain |
oxygen carrier oligomeric count: 24 pocket vol.: 542.0 Å3 d(Fe-oop): 0.173 Å |
| OXY | chainID: M, resSeq: 161, molecule: OXYGEN MOLECULE |
|||
1yhu-N-160 |
sad. +0.04 ruf. +0.09 dom. -0.25 bre. -0.02 |
HIS | chainID: N, resSeq: 96, molecule: Giant hemoglobins B chain |
oxygen carrier oligomeric count: 24 pocket vol.: 546.0 Å3 d(Fe-oop): 0.132 Å |
| OXY | chainID: N, resSeq: 161, molecule: OXYGEN MOLECULE |
|||
1yhu-O-160 |
sad. +0.02 ruf. +0.13 dom. -0.27 bre. +0.01 |
HIS | chainID: O, resSeq: 99, molecule: hemoglobin B1a chain |
oxygen carrier oligomeric count: 24 pocket vol.: 569.0 Å3 d(Fe-oop): 0.115 Å |
| OXY | chainID: O, resSeq: 161, molecule: OXYGEN MOLECULE |
|||
1yhu-P-160 |
sad. -0.26 ruf. -0.01 dom. +0.39 bre. +0.01 |
HIS | chainID: P, resSeq: 98, molecule: hemoglobin B2 chain |
oxygen carrier oligomeric count: 24 pocket vol.: 578.0 Å3 d(Fe-oop): 0.197 Å |
| OXY | chainID: P, resSeq: 161, molecule: OXYGEN MOLECULE |
|||
1yhu-Q-160 |
sad. +0.22 ruf. +0.29 dom. -0.27 bre. -0.02 |
HIS | chainID: Q, resSeq: 96, molecule: hemoglobin A1 chain |
oxygen carrier oligomeric count: 24 pocket vol.: 547.0 Å3 d(Fe-oop): 0.129 Å |
| OXY | chainID: Q, resSeq: 161, molecule: OXYGEN MOLECULE |
|||
1yhu-R-160 |
sad. +0.04 ruf. +0.04 dom. -0.28 bre. -0.02 |
HIS | chainID: R, resSeq: 96, molecule: Giant hemoglobins B chain |
oxygen carrier oligomeric count: 24 pocket vol.: 556.0 Å3 d(Fe-oop): 0.218 Å |
| OXY | chainID: R, resSeq: 161, molecule: OXYGEN MOLECULE |
|||
1yhu-S-160 |
sad. -0.03 ruf. +0.10 dom. -0.27 bre. -0.01 |
HIS | chainID: S, resSeq: 99, molecule: hemoglobin B1a chain |
oxygen carrier oligomeric count: 24 pocket vol.: 587.0 Å3 d(Fe-oop): 0.139 Å |
| OXY | chainID: S, resSeq: 161, molecule: OXYGEN MOLECULE |
|||
1yhu-T-160 |
sad. -0.26 ruf. +0.03 dom. +0.38 bre. -0.01 |
HIS | chainID: T, resSeq: 98, molecule: hemoglobin B2 chain |
oxygen carrier oligomeric count: 24 pocket vol.: 571.0 Å3 d(Fe-oop): 0.211 Å |
| OXY | chainID: T, resSeq: 161, molecule: OXYGEN MOLECULE |
|||
1yhu-V-160 |
sad. +0.01 ruf. +0.03 dom. -0.31 bre. -0.01 |
HIS | chainID: V, resSeq: 96, molecule: Giant hemoglobins B chain |
oxygen carrier oligomeric count: 24 pocket vol.: 543.0 Å3 d(Fe-oop): 0.189 Å |
| OXY | chainID: V, resSeq: 161, molecule: OXYGEN MOLECULE |
|||
1yhu-W-160 |
sad. +0.03 ruf. +0.11 dom. -0.29 bre. -0.03 |
HIS | chainID: W, resSeq: 99, molecule: hemoglobin B1a chain |
oxygen carrier oligomeric count: 24 pocket vol.: 594.0 Å3 d(Fe-oop): 0.132 Å |
| OXY | chainID: W, resSeq: 161, molecule: OXYGEN MOLECULE |
|||
1yhu-X-160 |
sad. -0.30 ruf. +0.02 dom. +0.41 bre. -0.03 |
HIS | chainID: X, resSeq: 98, molecule: hemoglobin B2 chain |
oxygen carrier oligomeric count: 24 pocket vol.: 542.0 Å3 d(Fe-oop): 0.220 Å |
| OXY | chainID: X, resSeq: 161, molecule: OXYGEN MOLECULE |
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