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PyDISH No: 02640

PDB: 1vf5,
chainID: P, resSeq: 301
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 3.0 Å
origomeric count: 16

axial ligand #1: TYR

chainID: P,
resSeq: 1,
Coordination distance[Å]: 2.276
molecule: CYTOCHROME F
Organism: Mastigocladus laminosus

axial ligand #2: HIS

chainID: P,
resSeq: 26,
Coordination distance[Å]: 2.474
molecule: same as ligand #1

List of other hemes in pdb:1vf5

ID of heme	Distortion	Axial ligands on heme		Function & structure
1vf5-A-301	`sad. -0.10 ruf. +0.06 dom. -0.07 bre. -0.27`	HIS	chainID: A, resSeq: 86, molecule: CYTOCHROME B6	electron transporter oligomeric count: 16 pocket vol.: 409.0 Å³ d(Fe-oop): 0.047 Å
1vf5-A-301	`sad. -0.10 ruf. +0.06 dom. -0.07 bre. -0.27`	HIS	chainID: A, resSeq: 187, molecule: CYTOCHROME B6
1vf5-A-302	`sad. -0.39 ruf. -0.04 dom. +0.04 bre. -0.26`	HIS	chainID: A, resSeq: 100, molecule: CYTOCHROME B6	electron transporter oligomeric count: 16 pocket vol.: 443.0 Å³ d(Fe-oop): 0.015 Å
1vf5-A-302	`sad. -0.39 ruf. -0.04 dom. +0.04 bre. -0.26`	HIS	chainID: A, resSeq: 202, molecule: CYTOCHROME B6
1vf5-A-303	`sad. +0.06 ruf. +0.01 dom. -0.25 bre. -0.15`	HOH	chainID: A, resSeq: 306, molecule: water	electron transporter oligomeric count: 16 pocket vol.: 653.0 Å³ d(Fe-oop): 0.094 Å
1vf5-A-303	`sad. +0.06 ruf. +0.01 dom. -0.25 bre. -0.15`	Not assigned.
1vf5-C-301	`sad. -0.11 ruf. -0.02 dom. +0.02 bre. -0.34`	TYR	chainID: C, resSeq: 1, molecule: CYTOCHROME F	electron transporter oligomeric count: 16 pocket vol.: 361.0 Å³ d(Fe-oop): 0.016 Å
1vf5-C-301	`sad. -0.11 ruf. -0.02 dom. +0.02 bre. -0.34`	HIS	chainID: C, resSeq: 26, molecule: CYTOCHROME F
1vf5-N-301	`sad. -0.06 ruf. +0.00 dom. +0.06 bre. -0.30`	HIS	chainID: N, resSeq: 86, molecule: CYTOCHROME B6	electron transporter oligomeric count: 16 pocket vol.: 428.0 Å³ d(Fe-oop): 0.030 Å
1vf5-N-301	`sad. -0.06 ruf. +0.00 dom. +0.06 bre. -0.30`	HIS	chainID: N, resSeq: 187, molecule: CYTOCHROME B6
1vf5-N-302	`sad. -0.33 ruf. -0.05 dom. +0.03 bre. -0.23`	HIS	chainID: N, resSeq: 100, molecule: CYTOCHROME B6	electron transporter oligomeric count: 16 pocket vol.: 430.0 Å³ d(Fe-oop): 0.006 Å
1vf5-N-302	`sad. -0.33 ruf. -0.05 dom. +0.03 bre. -0.23`	HIS	chainID: N, resSeq: 202, molecule: CYTOCHROME B6
1vf5-N-303	`sad. +0.43 ruf. -0.10 dom. -0.21 bre. -0.19`	HOH	chainID: N, resSeq: 1307, molecule: water	electron transporter oligomeric count: 16 pocket vol.: 654.0 Å³ d(Fe-oop): 0.083 Å
1vf5-N-303	`sad. +0.43 ruf. -0.10 dom. -0.21 bre. -0.19`	Not assigned.