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PyDISH No: 01734

PDB: 1mdv,
chainID: B, resSeq: 113
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 2.3 Å

axial ligand #1: HIS

chainID: B,
resSeq: 70,
Coordination distance[Å]: 2.02
molecule: CYTOCHROME C3
Organism: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

axial ligand #2: HIS

chainID: B,
resSeq: 106,
Coordination distance[Å]: 1.964
molecule: same as ligand #1

List of other hemes in pdb:1mdv

ID of heme Distortion Axial ligands on heme Function & structure
1mdv-A-110
sad. -0.14
ruf. -1.12
dom. -0.20
bre. +0.03
HIS chainID: A,
resSeq: 22,
molecule: CYTOCHROME C3
electron transporter
oligomeric count: 1
pocket vol.: 570.0 Å3
d(Fe-oop): 0.113 Å
HIS chainID: A, resSeq: 34,
molecule: CYTOCHROME C3
1mdv-A-111
sad. +0.17
ruf. -0.68
dom. -0.17
bre. -0.12
HIS chainID: A,
resSeq: 35,
molecule: CYTOCHROME C3
electron transporter
oligomeric count: 1
pocket vol.: 541.0 Å3
d(Fe-oop): 0.050 Å
HIS chainID: A, resSeq: 52,
molecule: CYTOCHROME C3
1mdv-A-112
sad. +0.42
ruf. -0.01
dom. -0.03
bre. -0.06
HIS chainID: A,
resSeq: 25,
molecule: CYTOCHROME C3
electron transporter
oligomeric count: 1
pocket vol.: 596.0 Å3
d(Fe-oop): 0.033 Å
HIS chainID: A, resSeq: 83,
molecule: CYTOCHROME C3
1mdv-A-113
sad. +0.62
ruf. +0.32
dom. +0.15
bre. -0.21
HIS chainID: A,
resSeq: 70,
molecule: CYTOCHROME C3
electron transporter
oligomeric count: 1
pocket vol.: 503.0 Å3
d(Fe-oop): 0.021 Å
HIS chainID: A, resSeq: 106,
molecule: CYTOCHROME C3
1mdv-B-110
sad. -0.31
ruf. -0.81
dom. -0.06
bre. -0.16
HIS chainID: B,
resSeq: 22,
molecule: CYTOCHROME C3
electron transporter
oligomeric count: 1
pocket vol.: 546.0 Å3
d(Fe-oop): 0.015 Å
HIS chainID: B, resSeq: 34,
molecule: CYTOCHROME C3
1mdv-B-111
sad. +0.18
ruf. -0.66
dom. -0.23
bre. -0.04
HIS chainID: B,
resSeq: 35,
molecule: CYTOCHROME C3
electron transporter
oligomeric count: 1
pocket vol.: 545.0 Å3
d(Fe-oop): 0.006 Å
HIS chainID: B, resSeq: 52,
molecule: CYTOCHROME C3
1mdv-B-112
sad. +0.05
ruf. -0.26
dom. -0.15
bre. -0.06
HIS chainID: B,
resSeq: 25,
molecule: CYTOCHROME C3
electron transporter
oligomeric count: 1
pocket vol.: 609.0 Å3
d(Fe-oop): 0.016 Å
HIS chainID: B, resSeq: 83,
molecule: CYTOCHROME C3