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PyDISH No: 01569

PDB: 1lj1,
chainID: A, resSeq: 804
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 2.0 Å

axial ligand #1: HIS

chainID: A,
resSeq: 61,
Coordination distance[Å]: 2.069
molecule: flavocytochrome c3
EC number: 1.3.99.1
Organism: Shewanella frigidimarina

axial ligand #2: HIS

chainID: A,
resSeq: 86,
Coordination distance[Å]: 2.076
molecule: same as ligand #1

List of other hemes in pdb:1lj1

ID of heme Distortion Axial ligands on heme Function & structure
1lj1-A-801
sad. -0.17
ruf. -0.83
dom. +0.19
bre. -0.09
HIS chainID: A,
resSeq: 18,
molecule: flavocytochrome c3
oxidoreductase
oligomeric count: 1
pocket vol.: 573.0 Å3
d(Fe-oop): 0.124 Å
HIS chainID: A, resSeq: 75,
molecule: flavocytochrome c3
1lj1-A-802
sad. -0.14
ruf. -1.21
dom. +0.07
bre. -0.01
HIS chainID: A,
resSeq: 8,
molecule: flavocytochrome c3
oxidoreductase
oligomeric count: 1
pocket vol.: 565.0 Å3
d(Fe-oop): 0.100 Å
HIS chainID: A, resSeq: 40,
molecule: flavocytochrome c3
1lj1-A-803
sad. +0.26
ruf. -0.78
dom. +0.30
bre. -0.04
HIS chainID: A,
resSeq: 58,
molecule: flavocytochrome c3
oxidoreductase
oligomeric count: 1
pocket vol.: 510.0 Å3
d(Fe-oop): 0.002 Å
HIS chainID: A, resSeq: 72,
molecule: flavocytochrome c3
1lj1-B-801
sad. -0.10
ruf. -0.93
dom. +0.27
bre. -0.08
HIS chainID: B,
resSeq: 18,
molecule: flavocytochrome c3
oxidoreductase
oligomeric count: 1
pocket vol.: 587.0 Å3
d(Fe-oop): 0.066 Å
HIS chainID: B, resSeq: 75,
molecule: flavocytochrome c3
1lj1-B-802
sad. -0.01
ruf. -1.36
dom. +0.17
bre. +0.02
HIS chainID: B,
resSeq: 8,
molecule: flavocytochrome c3
oxidoreductase
oligomeric count: 1
pocket vol.: 586.0 Å3
d(Fe-oop): 0.026 Å
HIS chainID: B, resSeq: 40,
molecule: flavocytochrome c3
1lj1-B-803
sad. +0.35
ruf. -0.80
dom. +0.34
bre. -0.05
HIS chainID: B,
resSeq: 58,
molecule: flavocytochrome c3
oxidoreductase
oligomeric count: 1
pocket vol.: 498.0 Å3
d(Fe-oop): 0.069 Å
HIS chainID: B, resSeq: 72,
molecule: flavocytochrome c3
1lj1-B-804
sad. +0.78
ruf. -0.27
dom. +0.03
bre. -0.10
HIS chainID: B,
resSeq: 61,
molecule: flavocytochrome c3
oxidoreductase
oligomeric count: 1
pocket vol.: 488.0 Å3
d(Fe-oop): 0.102 Å
HIS chainID: B, resSeq: 86,
molecule: flavocytochrome c3