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PyDISH No: 01397

PDB: 1jry,
chainID: A, resSeq: 802
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 2.0 Å

axial ligand #1: HIS

chainID: A,
resSeq: 8,
Coordination distance[Å]: 2.152
molecule: FLAVOCYTOCHROME C
EC number: 1.3.99.1
Organism: Shewanella frigidimarina

axial ligand #2: HIS

chainID: A,
resSeq: 40,
Coordination distance[Å]: 2.001
molecule: same as ligand #1

List of other hemes in pdb:1jry

ID of heme Distortion Axial ligands on heme Function & structure
1jry-A-801
sad. -0.10
ruf. -0.74
dom. +0.23
bre. -0.06
HIS chainID: A,
resSeq: 18,
molecule: FLAVOCYTOCHROME C
oxidoreductase
oligomeric count: 1
pocket vol.: 545.0 Å3
d(Fe-oop): 0.085 Å
HIS chainID: A, resSeq: 75,
molecule: FLAVOCYTOCHROME C
1jry-A-803
sad. +0.12
ruf. -0.81
dom. +0.34
bre. +0.01
HIS chainID: A,
resSeq: 58,
molecule: FLAVOCYTOCHROME C
oxidoreductase
oligomeric count: 1
pocket vol.: 461.0 Å3
d(Fe-oop): 0.057 Å
HIS chainID: A, resSeq: 72,
molecule: FLAVOCYTOCHROME C
1jry-A-804
sad. +0.94
ruf. -0.24
dom. +0.04
bre. +0.02
HIS chainID: A,
resSeq: 61,
molecule: FLAVOCYTOCHROME C
oxidoreductase
oligomeric count: 1
pocket vol.: 450.0 Å3
d(Fe-oop): 0.022 Å
HIS chainID: A, resSeq: 86,
molecule: FLAVOCYTOCHROME C
1jry-B-801
sad. -0.08
ruf. -0.89
dom. +0.22
bre. -0.03
HIS chainID: B,
resSeq: 18,
molecule: FLAVOCYTOCHROME C
oxidoreductase
oligomeric count: 1
pocket vol.: 550.0 Å3
d(Fe-oop): 0.085 Å
HIS chainID: B, resSeq: 75,
molecule: FLAVOCYTOCHROME C
1jry-B-802
sad. -0.04
ruf. -1.29
dom. +0.06
bre. +0.07
HIS chainID: B,
resSeq: 8,
molecule: FLAVOCYTOCHROME C
oxidoreductase
oligomeric count: 1
pocket vol.: 551.0 Å3
d(Fe-oop): 0.009 Å
HIS chainID: B, resSeq: 40,
molecule: FLAVOCYTOCHROME C
1jry-B-803
sad. +0.26
ruf. -0.92
dom. +0.35
bre. +0.00
HIS chainID: B,
resSeq: 58,
molecule: FLAVOCYTOCHROME C
oxidoreductase
oligomeric count: 1
pocket vol.: 475.0 Å3
d(Fe-oop): 0.080 Å
HIS chainID: B, resSeq: 72,
molecule: FLAVOCYTOCHROME C
1jry-B-804
sad. +0.76
ruf. -0.26
dom. +0.10
bre. -0.07
HIS chainID: B,
resSeq: 61,
molecule: FLAVOCYTOCHROME C
oxidoreductase
oligomeric count: 1
pocket vol.: 442.0 Å3
d(Fe-oop): 0.009 Å
HIS chainID: B, resSeq: 86,
molecule: FLAVOCYTOCHROME C