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PyDISH No: 00945

PDB: 1gws,
chainID: A, resSeq: 607
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 2.4 Å

axial ligand #1: HIS

chainID: A,
resSeq: 191,
Coordination distance[Å]: 1.893
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
Organism: DESULFOVIBRIO VULGARIS

axial ligand #2: HIS

chainID: A,
resSeq: 217,
Coordination distance[Å]: 1.933
molecule: same as ligand #1

List of other hemes in pdb:1gws

ID of heme Distortion Axial ligands on heme Function & structure
1gws-A-601
sad. -0.38
ruf. -0.04
dom. +0.08
bre. +0.13
HIS chainID: A,
resSeq: 35,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
electron transporter
oligomeric count: 1
pocket vol.: 466.0 Å3
d(Fe-oop): 0.017 Å
HIS chainID: A, resSeq: 53,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
1gws-A-602
sad. +0.37
ruf. -0.18
dom. +0.11
bre. +0.16
HIS chainID: A,
resSeq: 38,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
electron transporter
oligomeric count: 1
pocket vol.: 456.0 Å3
d(Fe-oop): 0.007 Å
HIS chainID: A, resSeq: 87,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
1gws-A-603
sad. -0.08
ruf. -0.28
dom. -0.23
bre. -0.05
HIS chainID: A,
resSeq: 80,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
electron transporter
oligomeric count: 1
pocket vol.: 409.0 Å3
d(Fe-oop): 0.001 Å
HIS chainID: A, resSeq: 108,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
1gws-A-604
sad. -0.10
ruf. -0.72
dom. +0.15
bre. +0.05
HIS chainID: A,
resSeq: 128,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
electron transporter
oligomeric count: 1
pocket vol.: 367.0 Å3
d(Fe-oop): 0.115 Å
HIS chainID: A, resSeq: 151,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
1gws-A-605
sad. -0.01
ruf. +0.03
dom. -0.17
bre. -0.10
HIS chainID: A,
resSeq: 152,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
electron transporter
oligomeric count: 1
pocket vol.: 500.0 Å3
d(Fe-oop): 0.065 Å
HIS chainID: A, resSeq: 175,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
1gws-A-606
sad. +0.08
ruf. -0.52
dom. +0.13
bre. +0.19
HIS chainID: A,
resSeq: 131,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
electron transporter
oligomeric count: 1
pocket vol.: 439.0 Å3
d(Fe-oop): 0.008 Å
HIS chainID: A, resSeq: 198,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
1gws-A-608
sad. -0.14
ruf. -0.71
dom. +0.20
bre. +0.19
HIS chainID: A,
resSeq: 267,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
electron transporter
oligomeric count: 1
pocket vol.: 454.0 Å3
d(Fe-oop): 0.022 Å
HIS chainID: A, resSeq: 281,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
1gws-A-609
sad. +0.44
ruf. -0.13
dom. +0.01
bre. -0.12
HIS chainID: A,
resSeq: 282,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
electron transporter
oligomeric count: 1
pocket vol.: 457.0 Å3
d(Fe-oop): 0.049 Å
HIS chainID: A, resSeq: 292,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
1gws-A-610
sad. +0.16
ruf. -0.19
dom. +0.10
bre. -0.24
HIS chainID: A,
resSeq: 270,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
electron transporter
oligomeric count: 1
pocket vol.: 447.0 Å3
d(Fe-oop): 0.022 Å
HIS chainID: A, resSeq: 322,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
1gws-A-611
sad. +0.07
ruf. -0.04
dom. -0.31
bre. +0.03
HIS chainID: A,
resSeq: 335,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
electron transporter
oligomeric count: 1
pocket vol.: 425.0 Å3
d(Fe-oop): 0.013 Å
HIS chainID: A, resSeq: 439,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
1gws-A-612
sad. -0.43
ruf. +0.06
dom. +0.04
bre. +0.04
HIS chainID: A,
resSeq: 310,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
electron transporter
oligomeric count: 1
pocket vol.: 377.0 Å3
d(Fe-oop): 0.033 Å
HIS chainID: A, resSeq: 351,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
1gws-A-613
sad. -0.49
ruf. -0.28
dom. -0.23
bre. +0.02
HIS chainID: A,
resSeq: 418,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
electron transporter
oligomeric count: 1
pocket vol.: 437.0 Å3
d(Fe-oop): 0.047 Å
HIS chainID: A, resSeq: 450,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
1gws-A-614
sad. -0.11
ruf. -0.27
dom. -0.04
bre. -0.14
HIS chainID: A,
resSeq: 451,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
electron transporter
oligomeric count: 1
pocket vol.: 478.0 Å3
d(Fe-oop): 0.014 Å
HIS chainID: A, resSeq: 466,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
1gws-A-615
sad. +0.20
ruf. -0.12
dom. +0.34
bre. -0.15
HIS chainID: A,
resSeq: 492,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
electron transporter
oligomeric count: 1
pocket vol.: 515.0 Å3
d(Fe-oop): 0.205 Å
Not assigned.
1gws-A-616
sad. -0.24
ruf. -0.07
dom. -0.16
bre. +0.13
HIS chainID: A,
resSeq: 485,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C
electron transporter
oligomeric count: 1
pocket vol.: 407.0 Å3
d(Fe-oop): 0.015 Å
HIS chainID: A, resSeq: 509,
molecule: HIGH-MOLECULAR-WEIGHT CYTOCHROME C