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PyDISH No: 00433

PDB: 1d4c,
chainID: A, resSeq: 602
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 2.9 Å

axial ligand #1: HIS

chainID: A,
resSeq: 60,
Coordination distance[Å]: 2.005
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
EC number: 1.3.99.1
Organism: Shewanella oneidensis

axial ligand #2: HIS

chainID: A,
resSeq: 74,
Coordination distance[Å]: 2.119
molecule: same as ligand #1

List of other hemes in pdb:1d4c

ID of heme Distortion Axial ligands on heme Function & structure
1d4c-A-601
sad. +0.07
ruf. -1.21
dom. -0.00
bre. +0.08
HIS chainID: A,
resSeq: 63,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
oxidoreductase
oligomeric count: 1
pocket vol.: 465.0 Å3
d(Fe-oop): 0.140 Å
HIS chainID: A, resSeq: 88,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
1d4c-A-603
sad. +0.23
ruf. -0.23
dom. +0.02
bre. -0.09
HIS chainID: A,
resSeq: 19,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
oxidoreductase
oligomeric count: 1
pocket vol.: 550.0 Å3
d(Fe-oop): 0.090 Å
HIS chainID: A, resSeq: 77,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
1d4c-A-604
sad. -0.05
ruf. -1.31
dom. -0.16
bre. +0.05
HIS chainID: A,
resSeq: 9,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
oxidoreductase
oligomeric count: 1
pocket vol.: 472.0 Å3
d(Fe-oop): 0.003 Å
HIS chainID: A, resSeq: 42,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
1d4c-B-601
sad. +0.36
ruf. -1.09
dom. -0.17
bre. +0.04
HIS chainID: B,
resSeq: 63,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
oxidoreductase
oligomeric count: 1
pocket vol.: 466.0 Å3
d(Fe-oop): 0.001 Å
HIS chainID: B, resSeq: 88,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
1d4c-B-602
sad. -0.01
ruf. -0.76
dom. +0.04
bre. +0.02
HIS chainID: B,
resSeq: 60,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
oxidoreductase
oligomeric count: 1
pocket vol.: 495.0 Å3
d(Fe-oop): 0.023 Å
HIS chainID: B, resSeq: 74,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
1d4c-B-603
sad. +0.06
ruf. -0.28
dom. -0.03
bre. -0.09
HIS chainID: B,
resSeq: 19,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
oxidoreductase
oligomeric count: 1
pocket vol.: 485.0 Å3
d(Fe-oop): 0.025 Å
HIS chainID: B, resSeq: 77,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
1d4c-B-604
sad. -0.05
ruf. -1.50
dom. -0.06
bre. +0.16
HIS chainID: B,
resSeq: 9,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
oxidoreductase
oligomeric count: 1
pocket vol.: 584.0 Å3
d(Fe-oop): 0.018 Å
HIS chainID: B, resSeq: 42,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
1d4c-C-601
sad. +0.30
ruf. -1.00
dom. +0.24
bre. -0.01
HIS chainID: C,
resSeq: 63,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
oxidoreductase
oligomeric count: 1
pocket vol.: 444.0 Å3
d(Fe-oop): 0.102 Å
HIS chainID: C, resSeq: 88,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
1d4c-C-602
sad. +0.25
ruf. -0.75
dom. -0.05
bre. -0.02
HIS chainID: C,
resSeq: 60,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
oxidoreductase
oligomeric count: 1
pocket vol.: 483.0 Å3
d(Fe-oop): 0.005 Å
HIS chainID: C, resSeq: 74,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
1d4c-C-603
sad. -0.13
ruf. -0.32
dom. +0.16
bre. -0.02
HIS chainID: C,
resSeq: 19,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
oxidoreductase
oligomeric count: 1
pocket vol.: 494.0 Å3
d(Fe-oop): 0.236 Å
HIS chainID: C, resSeq: 77,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
1d4c-C-604
sad. +0.00
ruf. -1.19
dom. -0.08
bre. +0.11
HIS chainID: C,
resSeq: 9,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
oxidoreductase
oligomeric count: 1
pocket vol.: 591.0 Å3
d(Fe-oop): 0.002 Å
HIS chainID: C, resSeq: 42,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
1d4c-D-601
sad. +0.46
ruf. -0.67
dom. +0.02
bre. -0.03
HIS chainID: D,
resSeq: 63,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
oxidoreductase
oligomeric count: 1
pocket vol.: 472.0 Å3
d(Fe-oop): 0.001 Å
HIS chainID: D, resSeq: 88,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
1d4c-D-602
sad. +0.07
ruf. -1.07
dom. -0.08
bre. +0.00
HIS chainID: D,
resSeq: 60,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
oxidoreductase
oligomeric count: 1
pocket vol.: 449.0 Å3
d(Fe-oop): 0.101 Å
HIS chainID: D, resSeq: 74,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
1d4c-D-603
sad. +0.16
ruf. -0.30
dom. +0.16
bre. -0.08
HIS chainID: D,
resSeq: 19,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
oxidoreductase
oligomeric count: 1
pocket vol.: 495.0 Å3
d(Fe-oop): 0.062 Å
HIS chainID: D, resSeq: 77,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
1d4c-D-604
sad. -0.10
ruf. -1.41
dom. -0.15
bre. +0.14
HIS chainID: D,
resSeq: 9,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE
oxidoreductase
oligomeric count: 1
pocket vol.: 502.0 Å3
d(Fe-oop): 0.084 Å
HIS chainID: D, resSeq: 42,
molecule: FLAVOCYTOCHROME C FUMARATE REDUCTASE