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PyDISH No: 00019

PDB: 19hc,
chainID: A, resSeq: 307
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 1.8 Å

axial ligand #1: HIS

chainID: A,
resSeq: 230,
Coordination distance[Å]: 1.991
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
Organism: Desulfovibrio desulfuricans

axial ligand #2: HIS

chainID: A,
resSeq: 245,
Coordination distance[Å]: 2.013
molecule: same as ligand #1

List of other hemes in pdb:19hc

ID of heme Distortion Axial ligands on heme Function & structure
19hc-A-301
sad. -0.20
ruf. -0.74
dom. -0.03
bre. -0.06
HIS chainID: A,
resSeq: 37,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
electron transporter
oligomeric count: 2
pocket vol.: 477.0 Å3
d(Fe-oop): 0.024 Å
HIS chainID: A, resSeq: 51,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
19hc-A-302
sad. +0.20
ruf. -0.71
dom. -0.07
bre. -0.05
HIS chainID: A,
resSeq: 52,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
electron transporter
oligomeric count: 2
pocket vol.: 406.0 Å3
d(Fe-oop): 0.010 Å
HIS chainID: A, resSeq: 63,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
19hc-A-303
sad. +0.46
ruf. -0.61
dom. +0.16
bre. -0.05
HIS chainID: A,
resSeq: 40,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
electron transporter
oligomeric count: 2
pocket vol.: 440.0 Å3
d(Fe-oop): 0.006 Å
HIS chainID: A, resSeq: 101,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
19hc-A-304
sad. -0.01
ruf. -0.12
dom. -0.08
bre. -0.06
HIS chainID: A,
resSeq: 115,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
electron transporter
oligomeric count: 2
pocket vol.: 390.0 Å3
d(Fe-oop): 0.025 Å
HIS chainID: A, resSeq: 218,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
19hc-A-305
sad. -0.55
ruf. +0.06
dom. -0.15
bre. -0.05
HIS chainID: A,
resSeq: 81,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
electron transporter
oligomeric count: 2
pocket vol.: 333.0 Å3
d(Fe-oop): 0.028 Å
HIS chainID: A, resSeq: 131,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
19hc-A-306
sad. -0.31
ruf. -0.28
dom. -0.17
bre. -0.05
HIS chainID: A,
resSeq: 197,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
electron transporter
oligomeric count: 2
pocket vol.: 424.0 Å3
d(Fe-oop): 0.018 Å
HIS chainID: A, resSeq: 229,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
19hc-A-308
sad. +0.10
ruf. -0.06
dom. +0.12
bre. -0.06
HIS chainID: A,
resSeq: 200,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
electron transporter
oligomeric count: 2
pocket vol.: 457.0 Å3
d(Fe-oop): 0.013 Å
HIS chainID: A, resSeq: 271,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
19hc-A-309
sad. -0.07
ruf. -0.18
dom. -0.17
bre. -0.07
HIS chainID: A,
resSeq: 264,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
electron transporter
oligomeric count: 2
pocket vol.: 374.0 Å3
d(Fe-oop): 0.001 Å
HIS chainID: A, resSeq: 288,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
19hc-B-301
sad. -0.24
ruf. -0.65
dom. -0.00
bre. -0.05
HIS chainID: B,
resSeq: 37,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
electron transporter
oligomeric count: 2
pocket vol.: 446.0 Å3
d(Fe-oop): 0.020 Å
HIS chainID: B, resSeq: 51,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
19hc-B-302
sad. +0.36
ruf. -0.71
dom. +0.01
bre. -0.05
HIS chainID: B,
resSeq: 52,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
electron transporter
oligomeric count: 2
pocket vol.: 447.0 Å3
d(Fe-oop): 0.043 Å
HIS chainID: B, resSeq: 63,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
19hc-B-303
sad. +0.55
ruf. -0.59
dom. +0.05
bre. -0.04
HIS chainID: B,
resSeq: 40,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
electron transporter
oligomeric count: 2
pocket vol.: 417.0 Å3
d(Fe-oop): 0.035 Å
HIS chainID: B, resSeq: 101,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
19hc-B-304
sad. +0.03
ruf. +0.04
dom. -0.02
bre. -0.08
HIS chainID: B,
resSeq: 115,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
electron transporter
oligomeric count: 2
pocket vol.: 356.0 Å3
d(Fe-oop): 0.013 Å
HIS chainID: B, resSeq: 218,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
19hc-B-305
sad. -0.54
ruf. +0.09
dom. -0.05
bre. -0.08
HIS chainID: B,
resSeq: 81,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
electron transporter
oligomeric count: 2
pocket vol.: 345.0 Å3
d(Fe-oop): 0.029 Å
HIS chainID: B, resSeq: 131,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
19hc-B-306
sad. -0.39
ruf. -0.31
dom. -0.22
bre. -0.01
HIS chainID: B,
resSeq: 197,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
electron transporter
oligomeric count: 2
pocket vol.: 452.0 Å3
d(Fe-oop): 0.014 Å
HIS chainID: B, resSeq: 229,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
19hc-B-307
sad. -0.43
ruf. -0.53
dom. -0.13
bre. -0.04
HIS chainID: B,
resSeq: 230,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
electron transporter
oligomeric count: 2
pocket vol.: 456.0 Å3
d(Fe-oop): 0.006 Å
HIS chainID: B, resSeq: 245,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
19hc-B-308
sad. +0.18
ruf. -0.01
dom. +0.04
bre. -0.06
HIS chainID: B,
resSeq: 200,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
electron transporter
oligomeric count: 2
pocket vol.: 468.0 Å3
d(Fe-oop): 0.013 Å
HIS chainID: B, resSeq: 271,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
19hc-B-309
sad. +0.06
ruf. -0.17
dom. -0.24
bre. -0.04
HIS chainID: B,
resSeq: 264,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)
electron transporter
oligomeric count: 2
pocket vol.: 378.0 Å3
d(Fe-oop): 0.046 Å
HIS chainID: B, resSeq: 288,
molecule: PROTEIN (NINE-HAEM CYTOCHROME C)